1. Submit a new request
Use sample reads instead of your own *
* 200
Homo sapiens
reads from the Illumina Genetic Analyzer platform
You may submit your own uncompressed PRB, FASTA and SEQ files, or files compressed using GZIP **
** Maximum file size is 2MBytes (you may GZIP files larger than this limit)
Illumina PRB / FASTA file:
(Mandatory)
Illumina SEQ file:
(Optional)
2. Target database
Database:
H_sapiens Genome NCBI Release 36.3 (T:4)
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H_sapiens Genome NCBI Release 36.3 (T:4)
H_sapiens Genome NCBI Release 36.3 (T:4)Fungi Genome NCBI Refseq Release 32 (T:4)
Fungi Genome NCBI Refseq Release 32 (T:4)
Invertebrate NCBI Genbank Release 169 (T:4)
Invertebrate NCBI Genbank Release 169 (T:4)
A_thaliana Genome NCBI Release 8.1 (T:4)
A_thaliana Genome NCBI Release 8.1 (T:4)
O_sativa Genome IRGSP Release 5.0 (T:4)
O_sativa Genome IRGSP Release 5.0 (T:4)
M_musculus RNA NCBI Release 37.1 (T:4)
M_musculus RNA NCBI Release 37.1 (T:4)
Z_mays Assemblies TIGR release 5.0 (T:4)
Z_mays Assemblies TIGR release 5.0 (T:4)
Viral Genome NCBI RefSeq Release 32 (T:4)
Viral Genome NCBI RefSeq Release 32 (T:4)
Eukaryotic Promoter Database EPD release 96 (T:4)
Eukaryotic Promoter Database EPD release 96 (T:4)
Avian Influenza Virus USDA Genbank Release 169 (T:4)
Avian Influenza Virus USDA Genbank Release 169 (T:4)
D_rerio RNA NCBI Release 3.1 (T:4)
D_rerio RNA NCBI Release 3.1 (T:4)
Papaya genome Carica draft assembly (T:4)
Papaya genome Carica draft assembly (T:4)
Plant Genome NCBI Refseq Release 32 (T:4)
Plant Genome NCBI Refseq Release 32 (T:4)
Plant RNA NCBI Refseq Release 32 (T:4)
Plant RNA NCBI Refseq Release 32 (T:4)
Drosophila Melanogaster NCBI Release 5.2 (T:4)
Drosophila Melanogaster NCBI Release 5.2 (T:4)
H_sapiens Genome NCBI Release 36.3 (T:4)Fungi Genome NCBI Refseq Release 32 (T:4)Invertebrate NCBI Genbank Release 169 (T:4)A_thaliana Genome NCBI Release 8.1 (T:4)O_sativa Genome IRGSP Release 5.0 (T:4)M_musculus RNA NCBI Release 37.1 (T:4)Z_mays Assemblies TIGR release 5.0 (T:4)Viral Genome NCBI RefSeq Release 32 (T:4)Eukaryotic Promoter Database EPD release 96 (T:4)Avian Influenza Virus USDA Genbank Release 169 (T:4)D_rerio RNA NCBI Release 3.1 (T:4)Papaya genome Carica draft assembly (T:4)Plant Genome NCBI Refseq Release 32 (T:4)Plant RNA NCBI Refseq Release 32 (T:4)Drosophila Melanogaster NCBI Release 5.2 (T:4)D_rerio NCBI Genome Release 3.1 (T:4)
D_rerio NCBI Genome Release 3.1 (T:4)
Plant Repeat TIGR Release July 08 (T:4)
Plant Repeat TIGR Release July 08 (T:4)
Virus NCBI Genbank Release 169 (T:4)
Virus NCBI Genbank Release 169 (T:4)
C_elegans Genome WormBase Release WS198 (T:4)
C_elegans Genome WormBase Release WS198 (T:4)
Fungi RNA NCBI Refseq Release 32 (T:4)
Fungi RNA NCBI Refseq Release 32 (T:4)
H_sapiens Genome NCBI Release 36.3 (T:4)Fungi Genome NCBI Refseq Release 32 (T:4)Invertebrate NCBI Genbank Release 169 (T:4)A_thaliana Genome NCBI Release 8.1 (T:4)O_sativa Genome IRGSP Release 5.0 (T:4)M_musculus RNA NCBI Release 37.1 (T:4)Z_mays Assemblies TIGR release 5.0 (T:4)Viral Genome NCBI RefSeq Release 32 (T:4)Eukaryotic Promoter Database EPD release 96 (T:4)Avian Influenza Virus USDA Genbank Release 169 (T:4)D_rerio RNA NCBI Release 3.1 (T:4)Papaya genome Carica draft assembly (T:4)Plant Genome NCBI Refseq Release 32 (T:4)Plant RNA NCBI Refseq Release 32 (T:4)Drosophila Melanogaster NCBI Release 5.2 (T:4)D_rerio NCBI Genome Release 3.1 (T:4)Plant Repeat TIGR Release July 08 (T:4)Virus NCBI Genbank Release 169 (T:4)C_elegans Genome WormBase Release WS198 (T:4)Fungi RNA NCBI Refseq Release 32 (T:4)Multi-Organisms Unigene NCBI Release Jan 2009 (T:4)
Multi-Organisms Unigene NCBI Release Jan 2009 (T:4)
Plant NCBI Genbank Release 167 (T:4)
Plant NCBI Genbank Release 167 (T:4)
H_sapiens Genome NCBI Release 36.3 (T:4)Fungi Genome NCBI Refseq Release 32 (T:4)Invertebrate NCBI Genbank Release 169 (T:4)A_thaliana Genome NCBI Release 8.1 (T:4)O_sativa Genome IRGSP Release 5.0 (T:4)M_musculus RNA NCBI Release 37.1 (T:4)Z_mays Assemblies TIGR release 5.0 (T:4)Viral Genome NCBI RefSeq Release 32 (T:4)Eukaryotic Promoter Database EPD release 96 (T:4)Avian Influenza Virus USDA Genbank Release 169 (T:4)D_rerio RNA NCBI Release 3.1 (T:4)Papaya genome Carica draft assembly (T:4)Plant Genome NCBI Refseq Release 32 (T:4)Plant RNA NCBI Refseq Release 32 (T:4)Drosophila Melanogaster NCBI Release 5.2 (T:4)D_rerio NCBI Genome Release 3.1 (T:4)Plant Repeat TIGR Release July 08 (T:4)Virus NCBI Genbank Release 169 (T:4)C_elegans Genome WormBase Release WS198 (T:4)Fungi RNA NCBI Refseq Release 32 (T:4)Multi-Organisms Unigene NCBI Release Jan 2009 (T:4)Plant NCBI Genbank Release 167 (T:4)M_musculus Genome NCBI Release 37.1 (T:4)
M_musculus Genome NCBI Release 37.1 (T:4)
Microbial Genome NCBI Refseq Release 32 (T:4)
Microbial Genome NCBI Refseq Release 32 (T:4)
H_sapiens RNA NCBI Release 36.3 (T:4)
H_sapiens RNA NCBI Release 36.3 (T:4)
Dengue Viral Genome (T:4)
Dengue Viral Genome (T:4)
Influenza Virus NCBI Genbank Release 171 (T:4)
Influenza Virus NCBI Genbank Release 171 (T:4)
3. Choose threshold
Threshold:
-10
-15
-20
-25
-30
- 10 is equivalent to one high quality base mismatch
4. Contact details
Name:
(Optional)
Email address:
(Mandatory)
Please enter an institutional email address i.e no hotmail, yahoo, gmail, etc.
Results will be sent to this email address.
To arrange for full trial of
SXOligoSearch
, please send an email to
enquiries@synamatix.com
.
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