Release 1.0.4
1.
Query sequence
Query sequence
or Upload query file
2.
Subsequence
From
To
3.
Target database
SynaBASE
Arabidopsis thaliana NCBI Release 9.1
Bacterial and Viral Genbank Sequence NCB...
C_elegans Genome Wormbase Release 236
Danio Rerio Genome NCBI Release 5.1
Danio Rerio RNA NCBI Release 5.1
Dengue Viral Genome
Drosophila melanogaster Genome NCBI Release 5_48
Eukaryotic Prpmoter EPD Release 114
Fungi RefSeq Genome NCBI Release53
Fungi RefSeq RNA NCBI Release53
H_Sapiens GRC Genome NCBI Release 37.3
H_Sapiens GRC RNA NCBI Release 37.3
Influenza Genbank Sequence NCBI Release April 2013
Invertebrates Genbank Sequence NCBI Release 194
Microbial Refseq Genome NCBI Release 58
Microbial Refseq RNA NCBI Release 58
Multi Organism Unigene Transcript NCBI R...
Mus musculus Genome NCBI Release 38.1
Mus musculus RNA NCBI Release 38.1
O_sativa Genome IRGSP Release 5
Plant Genbank Sequence NCBI Release 194
Plant RefSeq Genome NCBI Release53
Plant RefSeq RNA NCBI Release53
Vertebrate Genbank Sequence NCBI Release 194
Viral RefSeq Genome NCBI Release 58
Z_mays Assemblies TIGR release 5.0
4.
Options
Search method
Linear weighted
Maximum mismatches
1
2
3
4
5
Centre weighted
End letter mismatch score
-0.1
-0.2
-0.3
-0.4
-0.5
-0.6
-0.7
-0.8
-0.9
-1.0
Centre mismatch score
-1
Threshold
-1
-2
-3
-4
-5
Direction
Fwd
Rev - Complt
Maximum results reported
100
500
1000
5000
10000
20000
50000