Help guide
Compare type
One-vs.-One
One-vs.-All
Query type
Nucleotide - Nucleotide
Nucleotide - Protein
Protein - Protein
1.
Query sequence
Select a sequence from
a sequence database
Sequence expression
or Query sequence
(in raw or FASTA format)
2.
Target database
SynaBASE
Target sequence
3.
Options
Word size
Repeat filter
Yes
No
Window length
Indels
Score
4. Advanced options
-
Upload query file
Subsequence
From
To
Repeat filter
Weak - MRF 10.0
Low - MRF 3.0
Medium - MRF 2.0
Strong - MRF 1.0